Independent Computational Researcher
Focus: Single-cell genomics · Computational bias detection · AI for biological systems

Yashwant
Nama

Building computational biology tools at the intersection of single-cell genomics, systems immunology, and machine learning — independently, from Jaipur, India.

4
Preprints Published
7
Live Tools Deployed
419
GATE 2025 Score
N5
JLPT Japanese

Self-directed.
GPU-powered.
Independently published.

I am an independent computational researcher based in Jaipur, India, working at the intersection of single-cell transcriptomics, systems immunology, and machine learning. I hold an M.Sc. in Zoology (First Division, 72.68%) from the University of Rajasthan.

Without institutional affiliation, laboratory access, or external funding, I have authored four peer-reviewed preprints and deployed seven live bioinformatics tools — using only a personal NVIDIA RTX 4060 GPU and self-directed study. I believe rigorous computational biology can happen anywhere.

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Research Focus Single-cell genomics, batch effect detection, systems immunology, GNN-based cell analysis
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Hardware All models developed and validated on an NVIDIA RTX 4060 (local GPU environment) · 32GB RAM · CUDA-accelerated workflows
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Languages Hindi (Native) · English (C1/C2) · Japanese JLPT N5 · German A1
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Recognition GATE 2025 Life Sciences Qualifier · CRISPR Innovation Competition 2nd Prize · Rapture Biotech A+
Publications & Preprints

Research Output

⭐ Featured Work
01

scRNA-seq Bias Detector: An Integrated Unsupervised Anomaly Recognition and Multi-Track Quality Control Framework for Single-Cell Transcriptomics

→ Detects and quantifies batch effects in single-cell data to improve reproducibility.
Research Square · March 2026 · DOI: 10.21203/rs.3.rs-9160410/v1
scRNA-seq · MAIN
02

PanGen-AI: A CNN-Based Framework for Pathogen Variant Impact Prediction and Pangenomic Visualization

→ Predicts pathogen variant impact using deep learning on genomic sequences.
Research Square · 2026 · DOI: 10.21203/rs.3.rs-9140281/v1
Deep Learning · Secondary
📚 Additional Work
03

CD40-Immunosome: A Systems Modeling Framework for CD40–TRAF6 Signaling and CRISPR Synergy in Macrophages

→ Models macrophage immune signalling with ODE systems and CRISPR perturbation simulation.
Research Square · 2026 · DOI: 10.21203/rs.3.rs-9021170/v1
Systems Biology
04

Automated 3D Morphometric Analysis Reveals Nuclear Hypertrophy and Reduced Cell Density in cdh2-Deficient Zebrafish Embryos

→ Quantifies 3D nuclear architecture in zebrafish embryos using voxel-based morphometry.
Research Square · 2026 · DOI: 10.21203/rs.3.rs-8986693/v1
Spatial Analysis

Live Tools & Applications

Technical Profile

Skills & Stack

Languages & Frameworks

Python R PyTorch scikit-learn Pandas NumPy SciPy Streamlit

Bioinformatics

scRNA-seq Harmony UMAP/t-SNE GNN ODE Modelling CRISPR Sim Batch Correction AlphaFold

Hardware & Wet Lab

NVIDIA RTX 4060 CUDA DNA/RNA Isolation PCR Gel Electrophoresis Microbial Culture Git / GitHub LaTeX

Let's Connect

Open to PhD opportunities, research collaborations, and conversations about computational biology. Currently applying to positions in Germany, Japan, Lithuania, Sweden, and Switzerland.